Sea cucumber glycosaminoglycans have been well known as potential anticoagulant
and antithrombin agents. In this investigation, glycosaminoglycans were isolated from sea
cucumber Stichopus horrens (S. horrens) by papain enzymatic digestion. Crude
glycosaminoglycans were fractionated and purified by using anion-exchange chromatography on
the DEAE-Macro Prep column to give two fractions of fucosylated chondroitin sulfate (FCS)
and fucan sulfate (FS). Structural characteristics of F1 and F2 fractions were elucidated using
chemical and IR, NMR spectroscopic methods. The results showed that the monosaccharide
compositions of F1 consists of N-Acetyl-Galactosamine (glcnac), D-Glucuronic acid (glca) and
Fucose (Fuc) residues with different molar ratios, while F2 content only fucose residues. Sulfate
contents of F1 and F2 were 47.4 % and 48.1 %, respectively. F1 and F2 fractions were different
in the pattern of sulfation of N-Acetyl-Galactosamine and fucose residues. IR and NMR spectra
of two frations showed that sulfate groups were primarily occupied at C4 of pyranose residues in
F2 and C6, C2 and/or C3 of pyranose residues in F1 fraction. Our results contributed to the
knowledge on structural types of glycosaminoglycan from sea cucumbers in Viet Nam. The
establishment of structural features plays an important role in further studies of the structurebioactivity relationship of sea cucumber glycosaminoglycan.
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Vietnam Journal of Science and Technology 58 (6A) (2020) 199-208
doi:10.15625/2525-2518/58/6A/15527
ISOLATION, PURIFICATION AND STRUCTURAL
CHARACTERISTICS OF GLYCOSAMINOGLYCANS FROM SEA
CUCUMBER STICHOPUS HORRENS
Pham Duc Thinh
1, 2, *
, Duong Khanh Minh
2, 3
, Dinh Thanh Trung
1
1
Nhatrang Institute of Research and Application, VAST, 02 Hung Vuong, Nha Trang, Viet Nam
2
Graduate University of Science and Technology, VAST, 18 Hoang Quoc Viet, Ha Noi, Viet Nam
3
Institue of Vaccine and Medical Biologicals, 9 Pasteur, Nha Trang, Viet Nam
*
Email: ducthinh.nitra@gmail.com,; ducthinh@nitra.vast.vn
Received: 20 September 2020; Accepted for publication: 7 January 2020
Abstract. Sea cucumber glycosaminoglycans have been well known as potential anticoagulant
and antithrombin agents. In this investigation, glycosaminoglycans were isolated from sea
cucumber Stichopus horrens (S. horrens) by papain enzymatic digestion. Crude
glycosaminoglycans were fractionated and purified by using anion-exchange chromatography on
the DEAE-Macro Prep column to give two fractions of fucosylated chondroitin sulfate (FCS)
and fucan sulfate (FS). Structural characteristics of F1 and F2 fractions were elucidated using
chemical and IR, NMR spectroscopic methods. The results showed that the monosaccharide
compositions of F1 consists of N-Acetyl-Galactosamine (glcnac), D-Glucuronic acid (glca) and
Fucose (Fuc) residues with different molar ratios, while F2 content only fucose residues. Sulfate
contents of F1 and F2 were 47.4 % and 48.1 %, respectively. F1 and F2 fractions were different
in the pattern of sulfation of N-Acetyl-Galactosamine and fucose residues. IR and NMR spectra
of two frations showed that sulfate groups were primarily occupied at C4 of pyranose residues in
F2 and C6, C2 and/or C3 of pyranose residues in F1 fraction. Our results contributed to the
knowledge on structural types of glycosaminoglycan from sea cucumbers in Viet Nam. The
establishment of structural features plays an important role in further studies of the structure-
bioactivity relationship of sea cucumber glycosaminoglycan.
Keywords: glycosaminoglycans, fucosylated chondroitin sulfate, fucan sulfate, sea cucumber, Stichopus
horrens.
Classification numbers: 1.1.1, 1.5.1.
1. INTRODUCTION
Glycosaminoglycans present in sea cucumbers are especially interesting since they possess
anticoagulant, antithrombotic, antiangiogenic, anti-inflammatory, anti-oxidant, antivirus,
antitumor and many other activities [1]. Holothurian glycosaminoglycans classified into two
main types including fucosylated chondroitin sulfate (FCS) and fucan sulfate (FS) [2]. The
sulfated fucose branches of FCS play an important role for biological activities.
Pham Duc Thinh, Duong Khanh Minh, Dinh Thanh Trung
200
Glycosaminoglycan extracted from various sea cucumbers have different sulfation patterns of
fucose and N-Acetyl-galactosamine leading to different bioactivities [2 - 4].
Glycosaminoglycans were obtained from the body wall of some sea cucumbers, such as
Holothuria nobillis, Acaudina molpadioidea [2]; Pearsonothuria graeffei, Holothuria
vagabunda, Stichopus tremulus and Isostichopus badionotus [3]; Stichopus horrens [4];
Holothuria edulis, Ludwigothurea grisea [5]; Stichopus japonicus [6]; Apostichopus japonicus
[7]. The structure of these holothurian glycosaminoglycans were found to be species-specific [3, 4].
Sea cucumbers are used as healthy food and traditional medicine in Viet Nam. Sea
cucumbers are widely distributed in most of the coastal provinces [8]. The sea cucumber S.
horrens is a species widely distributed in tropical waters. Fucosylated chondroitin sulfate (FCS)
represents the major glycosaminoglycans found in sea cucumbers; other glycosaminoglycans
isolated are sulfated fucans or fucoidans from the body wall of the Vietnamese sea cucumber S.
horrens. Glycosaminoglycans from different species of holothuria vary in pattern of sulfation,
presence of branching, and molecular weight [3, 4].
In this paper, structural characteristics of two glycosaminoglycan fractions (F1 and F2)
isolated from sea cucumber S. horrens were studied using chemical methods, infrared (IR), and
nuclear magnetic resonance (NMR) spectroscopy. Fucan sulfate (FS) was built of the repeating
(1→3)-linked 4-O-sulfated α-L-fucopyranosyl and (1→3)-linked 2-O-sulfated α-L-
fucopyranosyl residues.
2. MATERIALS AND METHODS
2.1. Isolation and purification of glycosaminoglycans from sea cucumber S. horrens
* Isolation of glycosaminoglycans: glycosaminoglycans were isolated from the body wall
of sea cucumber S. horrens using a modification of a previously described method [9]. The fresh
body wall (1500 g) was washed with tape water, minced, homogenized, and pretreated by 4.5 L
ethanol 96 % for 6 hours at 50
o
C to remove lipids and pigments, and then dried at room
temperature. The defatted dried sea cucumber (50 g) was incubated with papain 2000 IU/gram (5
g) in 1 L of 0.1M sodium acetate buffer (pH 6.0) containing 5 mM EDTA and 5 mM cysteine at
60
o
C for 24 hours. The obtained mixture was centrifuged at 6000 rpm for 30 mins, discarded the
pellet. Glycosaminoglycans from the supernatant were precipitated with 10 %
hexadecyltrimethylammonium bromide solution (cetavlon) and left overnight at 4
o
C. The
precipitate was collected by centrifugation at 6000 rpm for 30 min, washed with distilled water
then redissolved with a solution of 3N NaCl in 20 % ethanol (5 × 100 mL) for 3 days. After that
adding 3 volumes of chilled ethanol to reprecipitate. This precipitate was collected by
centrifugation, washed with ethanol 75 % (3 × 250 mL) and dissolved in distilled water,
dialyzed, concentrated under a vacuum and lyophilized to obtain crude glycosaminoglycans.
* Purification of glycosaminoglycans: the crude glycosaminoglycans were fractionated and
purified by using anion-exchange chromatography on the DEAE-Macro Prep column (1.6 × 40
cm) equilibrated with 0.1M sodium acetate buffer (pH 5). The column was washed with 200 ml
of sodium acetate buffer. Then, the glycosaminoglycan fractions were successively eluted with a
linear gradient of NaCl (from 0.1 to 2 M) in 0.5 M sodium acetate (pH 5). The fractions were
collected at 10 mL, each eluted fraction was tested for carbohydrate content using the phenol-
sulphuric acid method [10]. Two glycosaminoglycans fractions (F1 and F2) were obtained from
the fractionation of crude glycosaminoglycans (Figure 1).
2.2. Structural characteristics
Isolation, purification and structural characteristics of glycosaminoglycans from sea ...
201
2.2.1. Chemical composition
Sulfate content: Sulfate content was determined by turbidity method with BaCl2/Gelatin
[11], using dipotassium sulfate (K2SO4) as a standard. The standard curve was plotted for
different concentrations of K2SO4 (Merck).
Protein content: The protein content of each glycosaminoglycan fraction was determined
by Lowry assay [12].
Uronic acid content: Uronic acid content was determined by the colorimetric method with
carbazole reagent and D-glucuronic acid (GlcA) as a standard [13].
Monosaccharide composition: The monosaccharide composition of the glycosaminoglycan
fractions was determined by ion chromatography (HPAEC-PAD), with 10 mg of each
fraction was hydrolyzed with 2M trifluoroacetic acid (TFA) at 100
o
C for 6 hours. The
Dionex ICS-6000 system with a guard MA1 (50 mm × 4) and analytical column MA1 (250
mm × 4), AS-DV module, Pulsed Amperometric Detector. The operating conditions were
mobile phase NaOH 1M with flow rate 0.4 ml/min and the time analysis was 30 min. The
standard curve was plotted for different concentrations of N-Acetyl-Galactosamine and
Fucose.
2.2.2. Structural analysis
FTIR method: The glycosaminoglycans fractions were pressed with KBr in a mass ratio of
1:2. The FTIR infrared spectrum of glycosaminoglycans was recorded on Tensor 27
spectrometer (Bruker, Germany) of Institute of Chemistry, Vietnam Academy of Science
and Technology.
NMR method: Nuclear magnetic resonance (NMR) spectra 1H-NMR and 13C-NMR were
recorded on Bruker 500 MHz NMR spectrometer (Germany) at the Institute of Chemistry,
Vietnam Academy of Science and Technology. The glycosaminoglycan fractions were
mixed in D2O with a concentration of 20 μg/ml, measured at a frequency of 500 MHz at a
temperature of 70
o
C.
3. RESULTS AND DISCUSSION
3.1. Isolation and purification
Figure 1. Fractionation of glycosaminoglycans from body wall of sea cucumber S. horrens by anion
exchange chromatography on the DEAE-Macro Prep column.
Glycosaminoglycans were extracted from the body wall of sea cucumber S. horrens by
Pham Duc Thinh, Duong Khanh Minh, Dinh Thanh Trung
202
using papain to destroy bonds between glycosaminoglycans and proteins [14]. The crude
glycosaminoglycans obtained from the extract by precipitate with four volumes of ethanol 98 %,
the yield of glycosaminoglycan was 4.2 % by dry weight equivalent polysaccharide sulfate
content (4.41 %) from S. horrens collected in Russia [4]. This result was significantly higher
than the content of glycosaminoglycan (polysaccharide sulfate) from other sea cucumbers such
as: Apostichopus japonicas 1.7 % [15]; Stichopus japonicas 0.62 % [6]; but lower than the GAG
content obtained from sea cucumbers of the same genus Stichopus tremulus 7.0 %, Stichopus
variegatus 6.8 % [3, 9].
Glycosaminoglycans were fractionated and purified by anion-exchange chromatography on
the DEAE-Macro Prep column to give two fractions F1 and F2 (Figure 1) with yield ratios were
16.7 % (w/w) and 22.6 % (w/w), respectively. These fractions were further analyzed of
compositions and structural characteristics by different analytical methods.
3.2. Structural characteristics
3.2.1. Chemical composition
Monosaccharide composition determined by HPAEC-PAD (High-Performance Anion-
Exchange Chromatography with Pulsed Amperometric Detector) after glycosaminoglycan
fractions hydrolyzed with TFA (Figure 2). Glucuronic acid (GlcA) content was determined by
the colorimetric method with carbazole reagent. The results were given in Table 1. Three
monosaccharides including fucose (Fuc), N-Acetyl-Galactosamin (GalNAc) and Glucuronic acid
(GlcA) with different molar ratio (1: 0.63: 0.41) constituted in fraction F1. On the contrary,
fraction F2 content only one fucose residue.
Figure 2. HPAEC-PAD chromatogram of monosaccharide composition: standards (A), fraction F1 (B)
and fraction F2 (C).
A
B
C
Isolation, purification and structural characteristics of glycosaminoglycans from sea ...
203
Table 1. Chemical composition of glycosaminoglycan fractions.
Glycosaminoglycans
fractions
Protein
(% w/w)
Sulfate
(% w/w)
Uronic acid
(% w/w)
Monosaccharide composition
(molar ratio)
Fuc GalNAc GlcA
F1 5.01 47.4 4.7 1 0.63 0.41
F2 nd 48.1 nd 1 nd nd
nd: not detected;
Beside of monosaccharide composition, F1 contained different amounts of sulfate, uronic
acid and protein were 47.4 %, 4.7 %, and 5.01 %, respectively. Uronic acid and protein were not
detected in F2, sulfate content of this fraction was 48.1 %. F2 fraction consisted of fucose and
sulfate groups assigned fucan sulfate; while, F1 contained three monosaccharide residues (Fuc,
GalNAc, GlcA) and sulfate groups classified as fucosylated chondroitin sulfate [3, 4, 15].
Previous studies reported that sea cucumber glycosaminoglycans usually divided into two types
(Fucosylated Chondroitin Sulfate-FCS and Fucan Sulfate-FS) such as glycosaminoglycans
(polysaccharides) from sea cucumbers H. nobilis, A. japonica [16]; H. Polii [17]; A.
molpadioidea, H. Nobilis [2]; P. graeffei, H. vagabunda, S. tremulus, I. badionotus [4], and H.
atra, H. arenicola, S. horrens [14], except polysaccharides from H. edulis obtained three
fractions including two FCS fractions and one FS fraction [14].
3.2.2. Structural characteristics
* FT-IR
Figure 3. The IR spectra of F1 (A) and F2 (B) fractions from sea cucumber S. horrens.
C = O
S = O
C-O-S
OH
A
C4-O-S
S = O
OH
B
Pham Duc Thinh, Duong Khanh Minh, Dinh Thanh Trung
204
* IR spectroscopy: The IR spectrum of F1 and F2 fraction were shown in Figure 3, the
signals at 3448.95 and 3446.46 cm
-1
with a broad intense peak that attributed to the stretching of
O-H [18]. The band at 2927.69 and 2937.36 cm-
1
reflect the stretching vibration of C-H
representing methyl group of fucose, that suggesting the presence of fucose in both fraction F1
and F2 [19]. Signals at 1643 cm
-1
and 1033 cm
-1
(Figure 3A) were assigned to the asymmetric
stretching vibration of C=O (carboxyl) and C-O-C, respectively, that belong to uronic acid group
[18]. The signal at 1641 cm
-1
(Fig. 3B) might be assigned to vibrations of crystallized water [18].
Three signal groups in IR spectrum of F1 (Figure 3A) were assigned to the sulfate groups,
particularly, those appeared at 1250.32 cm
-1
correspond to S=O asymmetric stretching vibration,
those at 825.37, 848.38 cm
-1
were assigned to the symmetric C–O–S stretching vibration [18],
which was the C4 axial position of the fucopyranose ring (4-O-sulfated-Fuc or 4-O-sulfated-
galnac), and those at 586.03 cm
-1
was caused by S–O stretching vibration, which showed that
the sulfate group also had a small amount at the C2 and/or C3 positions [18]. IR spectrum of F2
(Figure 3B) showed strong absorptions at 1233 cm
-1
(S=O) and 842 cm
-1
to indicate the presence
of 4-O-sulfated-Fuc, as according to previous reports of fucan sulfate [2, 18].
* NMR spectroscopy: Similarly, the NMR spectrum of fucosylated chondroitin sulfate
(FCS) of other sea cucumber species in the world has been published [1, 14, 15, 17]. The
1
H-
NMR spectra of F1 and F2 fractions were also very complicated with many different signal
regions since the structural composition contained many different sugars, besides, different
degrees of sulfate and O-glycoside bonds. The
1
H-NMR spectrum (Figure 4A) showed strong
signals at 2.05 ppm and 1.26 ppm, which were identified as the characteristic signals of methyl
protons of GalNAc and Fuc, respectively. The chemical shifts of proton anomeric signals at 5.0-
5.8 ppm considered the presence of sulfated fucose residues [1]. Two signals at 5.67 ppm and
5.4 ppm assigned to 2,4-O-disulfated fucose (Fuc2,4S) and 3,4-O-disulfated fucose (Fuc3,4S)
[2]. Thus, F1 contained two types of fucose residue with different sulfation patterns content,
which were similar to fucosylated chondroitin sulfate from sea cucumnbers H. vaganbuda, H.
polii [1, 17].
Figure 4. The
1
H-NMR spectra of F1 (A) and F2 (B) fractions from sea cucumber S. horrens.
However, FCS from S. horrens collected in Russia only consisted of one type of 2,4-O-
disulfated fucose residue [20], it may be explained as due to the difference of extraction method
and localization to chemical composition and structural characteristic of glycosaminoglycan [1,
2, 20]. The proton signals at the region of 3.3 - 4.4 ppm (Figure 4A) were attributed to protons
of C2-C5 of glycosidic ring. So that, it is difficult to give accurate information due to the
Fuc-CH3
GalNAc-CO-CH3
Fuc2S4S-H1
Fuc3,4S-H1
Fuc-CH3
Fuc-H1
A
B
H2 - H5
Isolation, purification and structural characteristics of glycosaminoglycans from sea ...
205
overlapping of signals [1, 2]. So, the structural backbone of F1 (Figure 5A) provide similar to
the backbone of fucosylated chondroitin sulfate from sea cucumber species [1, 20], the main
difference is in the sulfate group density and the position of the internal sulfate group in each
pyranose residues.
H
H
O
O
R3
O
NH
CH2OR
O
H
O
O
OH
COO-
O
-O3SO
R2 R1
CH3
O
CH3
OSO3-
H
O
H
R
Me
O
OSO3Na
O
OH
OH
Me
O
OSO3Na
O
OH
Me
O
OSO3Na
O
OH
Me
OH
OSO3-
H
O
H
R
Me
O
OSO3Na
O
OH
OH
Me
O
OSO3Na
O
OH
Me
O
OSO3Na
O
OH
Me
OH
n
Figure 5. Structures of fucosylated chondroitin sulfate F1 (A) and Fucan sulfate F2 (B).
Similarly, the
1
H-NMR spectrum (Figure 4B) of F2 had the strong signals at about 1.20 -
1.27 ppm assigned to the methyl protons of fucose residues (-CH3) [3]. The chemical shifts of
the envelope of anomeric signals at 5.1 - 5.4 ppm were consistent with the existence of different
types of α-L-fucose units [7]. The intense signals at 5.19 ppm assigned to 4-O-sulfated-Fucose
(Fuc4S), other weak signals at 5.3 - 5.4 ppm identified as 2-O-sulfated-Fucose (Fuc2S) [3, 7].
This result was also confirmed by the FT-IR spectrum. Previous studies indicated that sea
cucumber fucans sulfate were built of different types of fucose residues [2, 3, 7, 9], except for
fucan sulfate from S. horrens having only one type of Fuc2S residue [4].
Figure 6. The
13
C-NMR spectrum of fraction F2 from sea cucumber S. horrens.
The 13C-NMR spectrum of F2 was shown in Figure 6, revealing that signals at 90 - 100 ppm
and 16.00 ppm chemical shift regions were characterized for anomeric carbon (C1) and C6
carbon methyl group (Fuc-CH3) of the fucose rings [3, 21]. Simultaneously, the NMR spectra
(Figure 6 and Figure 4B) also appeared some signals at the chemical shifts 92.81 ppm (C1); 5.4
ppm (H1) and 96.84 ppm (C1); 5.19 (H1) confirmed the presence of (1→3)-linked α-Fuc2S and
(1→3)-linked α-Fuc4S units, respectively [5]. The signals in the region 65 - 75 ppm showed that
Fuc-C1
Fuc-C6 C2 – C5
A
B
R, R1 = H or SO3
-
R2 = H, SO3
- or Fuc
R = H or SO3
-
Pham Duc Thinh, Duong Khanh Minh, Dinh Thanh Trung
206
the residual of carbon C2-C5 of the fucose ring, the similar result indicated in the previous report
of fucan sulfate of S. horrens [4].
4. CONCLUSION
Two fractions of glycosaminoglycans contained sulfate were isolated and purified from the
sea cucumber S.horrens. These glycosaminoglycans were characterized by chemical and
spectroscopy methods. F1 fraction consist of D-glucuronic acid, N-Acetyl-galactosamine, α-L-
Fucose and sulfation groups. F2 fraction classified to fucan sulfate composed of α-L-Fucose and
sulfation groups, it’s structure was built of (1→3)-linked α-Fuc2S and (1→3)-linked α-Fuc4S
residues (Figure 5B). Our results contributed to the knowledge on structural types of
glycosaminoglycans from sea cucumber S. horrens in Viet Nam. The establishment of structural
features plays an important role in further studies of the structure-bioactivity relationship of sea
cucumber glycosaminoglycans.
Acknowledgements: The research funding of this work supported by the National Foundation of Science
and Technology Development (NAFOSTED) under Grant number: 106.02-2019.34.
Author contributions: Pham Duc Thinh and Duong Khanh Minh: designed the experiment, analyzed the
data and wrote the manuscript; Dinh Thanh Trung: obtained and purified glycosaminoglycans; Pham Duc
Thinh: revised the manuscript
Conflict statements: The authors declare no conflict of interest.
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